PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497592.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family Trihelix
Protein Properties Length: 498aa    MW: 54513 Da    PI: 6.7517
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497592.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.78.7e-20118205187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     +W++  + +L+ea++e+ ++l+rg+l++ +Weev++++  r +  ++s +qCk+k +nl+kryk ++++++++ + s+s++p+f+q+e+
  XP_004497592.1 118 EWSDTAIVCLLEAYTEKFTQLNRGNLRGRDWEEVASVVseRCENQSKSVEQCKNKVDNLKKRYKLERHRMNNG-CISTSHWPWFKQMEH 205
                     5*************************************666677899*************************8.99999********85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.9E-20116206No hitNo description
Gene3DG3DSA:3.40.1160.101.8E-69255491IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.958257492IPR015963Uridylate kinase, bacteria
SuperFamilySSF536331.28E-56258491IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042542.06E-107260492No hitNo description
PfamPF006961.8E-25261471IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MASCDDDDDF SILRDDNPHS HHLHQTFAPH HHHHHHHFST ASVQPKPVAD DDTDDYGNPF  60
DDDAGSEKRK DRDEIGDGTT SYGFNKRSKS VSSGNGGVSV GVSIGVGGGA EYRKDREEWS  120
DTAIVCLLEA YTEKFTQLNR GNLRGRDWEE VASVVSERCE NQSKSVEQCK NKVDNLKKRY  180
KLERHRMNNG CISTSHWPWF KQMEHIVGNS LPSKFAEEDK AIVPASNSPR QSKRYGVATS  240
SSGGQVNTLK SKALSNLRWR RVVLKISGAA LTGSDTCNID PKVAMLVSSE VAIASRLGVE  300
VAIVVGGRNF FCGDAWVTAT GLERCTAYQV GMMATVMNSL LLQSTLEKMG VQTRVQTSVS  360
MQEFAEPYNR QRAIRHLEKG RVVIFGGIGF GAGNPLFSTD IASALRASEL NAQAVLKGTN  420
VDGVYDCNSR DNNFTFEHIS FRELVSRGVA TMDMSALTFC EENAIPVVVF NLLAPGNISK  480
ALCGEQVGTL IDQTGALS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A8e-612514911239Uridylate kinase
3ek5_B8e-612514911239Uridylate kinase
3ek5_C8e-612514911239Uridylate kinase
3ek5_D8e-612514911239Uridylate kinase
3ek5_E8e-612514911239Uridylate kinase
3ek5_F8e-612514911239Uridylate kinase
3ek6_A8e-612514911239Uridylate kinase
3ek6_B8e-612514911239Uridylate kinase
3ek6_C8e-612514911239Uridylate kinase
3ek6_D8e-612514911239Uridylate kinase
3ek6_E8e-612514911239Uridylate kinase
3ek6_F8e-612514911239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1395251e-108AC139525.3 Medicago truncatula clone mth2-26o22, complete sequence.
GenBankAC1467881e-108AC146788.13 Medicago truncatula clone mth2-11a6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497592.10.0PREDICTED: uncharacterized protein LOC101509939
TrEMBLV7BJN90.0V7BJN9_PHAVU; Uncharacterized protein
STRINGGLYMA13G21371.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein